PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G055900.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 340aa    MW: 38290.7 Da    PI: 5.3008
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G055900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.17.8e-35381292102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++ ++sws+++nsf+v+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++
  Sevir.9G055900.2.p  38 FLTKTYDMVDDPTTDAVVSWSATNNSFIVWDPHIFGTVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRN 119
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Sevir.9G055900.2.p 120 LLKNIRRRKP 129
                         *******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-3534127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-6134127IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-3834127IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.8E-3138127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MNHGMLNSVK VESRPSEVTA NGQPRPMDGL HDGGPPPFLT KTYDMVDDPT TDAVVSWSAT  60
NNSFIVWDPH IFGTVLLPRY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQRNL  120
LKNIRRRKPP HSSPNQQSLG SYLEVGHFGY DEEIDQLKRD KQLLMAEVVK LRQEQQNTKS  180
DLQAMEEKLK DTEQKQQHMM AFMARVMQNP EFMRQLVSQH EMRKGLEDAI SKKRRRRIDQ  240
GPEADSMGNG SSLEQGSHAV FEPQEPVESL ANGVPSDLES SSVEAKGFEV QQGVSSGGSE  300
RLKGRPSGEL NDDFWEDLLH EGGLGAEAGN AVVQDDMDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-273612718120Heat shock factor protein 1
5d5u_B3e-273612727129Heat shock factor protein 1
5d5v_B3e-273612727129Heat shock factor protein 1
5d5v_D3e-273612727129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231236KKRRRR
2232237KRRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0418770.0BT041877.1 Zea mays full-length cDNA clone ZM_BFb0071P12 mRNA, complete cds.
GenBankBT0884100.0BT088410.1 Zea mays full-length cDNA clone ZM_BFc0182A01 mRNA, complete cds.
GenBankEU9569230.0EU956923.1 Zea mays clone 1577511 heat shock factor protein HSF30 mRNA, complete cds.
GenBankJX4284940.0JX428494.1 Zea mays subsp. mays clone pUT3092 HSF11 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981438.20.0PREDICTED: heat stress transcription factor A-2e-like
SwissprotQ6F3880.0HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLK4AC790.0K4AC79_SETIT; Uncharacterized protein
STRINGSi036486m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-105heat shock transcription factor A6B